Since I finally got the Bioperl pluginbundle together last week, I moved on to actually using it this week. The first goal of the actual reorganization is to break out Bio::Root into its own distribution. This will include the following modules (as of now, this may change): Bio::Root, Bio::Root::Exception, Bio::Root::RootI, Bio::Root::IO, Bio::Root::Storable and Bio::Root::Utilities. Bio::Root::HTTPget has been removed and will be packaged into its own distribution. There is still some tweaking to be done, but progress is being made….